3939 days ago
3934 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics...-genome alignment & comparisons] Searching for SNPs with cloud computing. Langmea...l, Genome Biol 10(11):R134, 2009 Full Text Calling SNPs without a reference sequence....3772 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/resource with brief...cialization of the program GenomePop just to manage SNPs under more flexible and usefu...s rate matrices. http://www.cibiv.at/software/sissi/SNPsim Coalescent simulation of ho...3729 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbenc...clean and filter contigs, look for snps and indels., filter snps, do statistics for: reads, co...dated version uses a BWT. Can call SNPs and INDELs. Author is Ruiqian...ection tool. It detects homozygous SNPs and indels by aligning shotgu...3511 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iOS app that allows for the opening..., with predictions of computationally annotated functional impacts of SNPs. Database entries represent nsSNPs in dbSNP and 1000 Genomes col...3533 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo and...sequences. The updated version uses a BWT. Can call SNPs and INDELs. Author is Ruiqian...polymorphism detection tool. It detects homozygous SNPs and indels by aligning shotgu...3235 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...eeBayes Description: finds SNPs, Indels, MNPs; reports variants bas...-line application to identify SNPs between tumor/normal pairs- p...ts; can score both coding and non-coding variants; Four tools: V...ut: File containing annotated SNPs is copied from SNP list and s...2901 days ago
Genome Assembly Tools and Software - PART1 !!
...conserved genes (and – in theory – non-coding regions) that can occur in mu...;directory). The assembly does not only encode SNPs and short INDELs, but also re...validating polymorphism candidate sites (e.g., SNPs) reported by polymorphism dis...2678 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two taxa which have originated from two different ancestors. ancestor -- Any organism, population, or species from which s...2454 days ago