PEAR: a fast and accurate Illumina Paired-End reAd mergeR
PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully paralle...target fragment size as input. In addition, it implements a statistical test for minimizing false-positive resu...2950 days ago
Painless package development for R
Devtools makes package development a breeze: it works with R’s existing conventions for code structure, adding efficient tools to suppo...quo;re writing a significant amount of code. Before...le Group – https://groups.google.com/foru...2924 days ago
CNIDARIA: fast, reference-free phylogenomic clustering
Motivation: Identification of biological specimens is a major requirement for a range of applications. Reference-f...e present Cnidaria, a practical tool for clustering genomic and transc...supra-species level and 78% accuracy for s...data are available at Bioinformatics onli...2879 days ago
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GeneValidator - Identify problems with predicted genes
GeneValidator helps in identifing problems with gene predictions and provide useful information extracted from analysing orthologs in BLA...o use GeneValidator on a few sequences, see our onlin...with protein-coding gene predictions. Bioinform...2809 days ago
Method in Comparative genomics !!
...c identification of orthologs for more than 90% of genes and in...c change. We present methods for the identification of protein...onal proteins and developed a test for g...and specificity. We used this test to revisit the genome of S. c...to infer a candidate function for novel motifs. Our results dem...2733 days ago
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