MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
MECAT is an ultra-fast Mapping, Error Correction and de novo Assembly Tools for single molecula sequencing (SMRT) reads. MECAT e...rs and error correction tools. MECAT can be used for ef...an the current PBcR-Mhap pipeline. MECAT performance we...2201 days ago
fragScaff: Genome Assembly with Contiguity Preserving Transposition
Contiguity preserving transposition and sequencing (CPT-seq) is an entire...rom 5 kilobases to >1 megabase. This software, fragScaff, leverages co...erent pools as a source of contiguity information for sc...#. In vitro, long-range sequence information f...2198 days ago
GAPPadder: A Sensitive Approach for Closing Gaps on Draft Genomes with Short Sequence Reads
This software is provided ``as is” without warranty of any kind. In no event shall the author be held responsible for any damage resulting from the use of this softwa...and Yufeng Wu. "GAPPadder: A Sensitive Approach for Closing...2198 days ago
2197 days ago
SOAP2 : Short Oligonucleotide Analysis Package 2
SOAPaligner/soap2 is a member of the SOAP (Short Oligonucleotide Analysis Package). It is an updated version of SOAP software for sh...program features in super fast and accurate alignment for huge am...2189 days ago
WhatsHap: fast and accurate read-based phasing
WhatsHap is a software for phasing genomic variants using DNA sequencing reads, also call...hasing or haplotype assembly. It is especially suitable for lo...ead-based phasing) Works well with Illumina, PacBio, Oxford Nanopo...2184 days ago
ASplice: a scalable and memory-efficient algorithm for de novo transcriptome assembly
With increased availability of de novo assembly algorithms, it is...that are specifically designed for performing transcriptome assembly fr...covers alternatively spliced isoforms and expression levels while...cal memory. Availability – A softwa...and memory-efficient algorithm for de novo...2148 days ago
NAViGaTOR: Network Analysis, Visualization and Graphing Toronto
NAViGaTOR – Network Analysis, Visualization, & Graphing TORonto is a software system for scaleable visualizing and analyzing networks. The current version, NAViGaTOR 3, increases modularity, i...2148 days ago
transrate: Understanding your transcriptome assembly
Transrate is software for de-novo transcriptome assembly quality analysis. It exa...s it to experimental evidence such as the sequencing reads, reporting quality scores for contigs...2138 days ago
Nanopolis: polish a genome assembly
Software package for signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft...2125 days ago