RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebrew Universit...salem, represents a novel method for the efficient and robust de n...inity combines three independent software modules: Inchworm, Chrys...extract full-length splicing isoforms...nerating full-length transcripts for a domin...2957 days ago
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger. It...as input. In addition, it implements a statistical test for mi...computer. More at http://www.exelixis-lab.org/web/software/pe...2943 days ago
REAPR: a universal tool for genome assembly evaluation
REAPR is a tool that evaluates the accuracy of a genome assembly u...ut the use of a reference genome for comparison. It can be used in...flag other errors in an assembly for manual inspection. It reports...y based on the error calls. The softwa...es as input an assembly in FASTA format and...2943 days ago
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HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and represents knowledge which is important to know before d...Expression Arrays using R/Bioconductor General Tips for Data An...2924 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such as the PacBio RSII or Oxford Nanopore MinION). The software is...2906 days ago
RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
The RAST (Rapid Annotation using Subsystem Technology) annotation en...works by offering a standard software pipeline for identifying genomic features...ace with advancements in bioinformatics, it has become desirabl...es. RASTtk offers a choice of software for id...ions. This is the first major software re...2922 days ago
Painless package development for R
Devtools makes package development a breeze: it works with R’s existing conventions for code structure, adding efficient tools to sup...o;re writing a significant amount of code. Before y...Group – https://groups.google.com/forum/#!for...2916 days ago
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