Results for "ont"
Top-level pages
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...De novo genome assembly MHAP Produces highly continuous assembly (fully resolve...Miniasm Assembler of long noisy reads (SMRT, ONT) using the Overlap-Layout Con...assembled or unassembled Illumina, PacBio, and ONT data (based on MinHash dimens...2378 days ago
Run miniasm assembler on nanopore reads !
...the raw input reads. Find the detail of the reads repeats: fq2fa ONT_A.fastq ONT_A.fasta minimap2 -xava-o...AONTself30000final.eps minidot -f 5 -m 20000 AONTself.paf > AONTself20000.eps sed 's/_tem...2337 days ago
Some useful Bioinformatics links
...| bioRxiv https://www.biorxiv.org/content/early/2017/09/10/187054 Ra...egKK271NwMq-NfzA%3D%3D nanoporetech/ont-assembly-polish: ONT assembly...de10.info/index.php%3Foption%3Dcom_content%26view%3Darticle%26id%3D64...lysis-tna/ Clustering metagenomic contigs on tetranucleotide frequen...2248 days ago
Frequent parameters for bioinformatics tools !
... blastp (VF) -culling_limit 2 RGI (ABR) --input_type contig bowtie2 (mapping) --sensitive minimap2 (mapping) -a -x map-ont samtools mpileup (SN...1292 days ago
- ...(1) Pacific Biosciences (PacBio) and (2) Oxford Nanopore (ONT). Listed below are some of the popular and recently introduced PacBio and ONT simulators. Links to their pu...
590 days ago
