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RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
The RAST (Rapid Annotation using Subsystem Technology) annotation engine was built in 2008 to...s (i.e., protein-encoding genes and RNA) and annotating their functions. Recently, in order t...2930 days ago
Painless package development for R
Devtools makes package development a breeze: it works with R’s existing conventions for...kage development. With devtools, developing a package becomes so easy that it will be your de...2924 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, c...orthologous, i.e. following the conserved order and orientation of features,...ked by our users! Please feel free to add your own...iling us) is here. If you use Satsuma in your re...2914 days ago
- Database to Database Conversions db2db allows for conversions of identifie...ns. To use db2db select the input type of your data, changing the input type...n select one or more output types and add your ide...nst all the outputs selected in the exact order a...
2894 days ago
CNIDARIA: fast, reference-free phylogenomic clustering
Motivation: Identification of biological specimens is a major requirement for a range...Supplementary information: Supplementary data are available at Bioinformatics online.2879 days ago
- _A5-miseq_ is a pipeline for assembling DNA sequence data generated on the Illumina sequen...ns where A5-miseq is not the right tool for the job. In order to...Use a different assembler if a tool like FastQC reports your da...
2817 days ago
- The programs are listed in alphabetical order, Look at the individual applications or go to the GROUPS page to search by category. EMBASSY applications are described in separate documentation for each package. Applications in the current release
2839 days ago
GeneValidator - Identify problems with predicted genes
GeneValidator helps in identifing problems with gene predictions and provide useful informatio...ator Web App -http://genevalidator.sbcs.qmul.ac.uk. If you use GeneValidator in your wo...2809 days ago
- In this exercise, a previously annotated gene will be used to measure the accuracy of differen...signal, content and homology (protein and cDNA sequences) methods will be employed in order t...
2809 days ago
- Before uploading a data file, check the samples gallery to make sure that your data format is compatible. Your file must be plain text. Your data...umns are limited to 75. If you are using order, s...s in combination they must appear in that order....
2802 days ago
