Results for "orthology"
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Orthology relations can be used to transfer a...otein) to another. Hence, detecting orthology relations has become an impor..., can cause erroneous assignment of orthology relations. In closely-related...for accurately predicting pairwise orthology relations based on gene neigh...2380 days ago
ASAR: Advanced metagenomic Sequence Analysis in R
...ion, aggregation and visualization of metagenomic data is presented. Functional analysis with a SEED hierarchy and pathway diagram based on KEGG orthology based upon MG-RAST annotation...2143 days ago
KEGG Mapper – Reconstruct Pathway
...me annotations. The input data is a single gene list (for a single organism) or multiple gene lists (for multiple organisms) annotated with KEGG Orthology (KO) identifiers or K numbers...1987 days ago
- KOALA (KEGG Orthology And Links Annotation) is KEGG's internal annotation tool for K number assignment of KEGG GENES using SSEARCH computation. BlastKOALA and GhostK...
1987 days ago
UPhO: Scripts for homology and orthology assessment from genomic sequences.
UPhO finds orthologs with and without inparalogs from input gene family trees. Refer to the Documentation.pdf for more detailed explanations on its usage, installation a...1953 days ago
Mercator: Multiple Whole-Genome Orthology Map Construction
...rming comparative analyses of genomic sequence. Here we present our initial work in the form a program called Mercator that constructs orthology maps between multiple whole g...1462 days ago
Orthoflow: workflow for phylogenetic inference of genome-scale datasets of protein-coding genes
...ut sources including annotated contigs in Genbank format and FASTA files containing CDSs. It uses several state of the art inference methods for orthology inference, either based on HM...90 days ago
OMArk: software for proteome (protein-coding gene repertoire) quality assessment
...nes with regard to their homologs, and identifies the presence of contamination from other species. OMArk relies on the OMA orthology database, from which it exploits orthology relationships, and on the OMA...89 days ago
