Results for "output"
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...to convert genetic information stored in GenBank entries to graphical maps. The input text file has to be in GenBank flat file format, whereas the output format can be chosen among se...2818 days ago
- ...to 1G reads. Its memory consumption is around 5Gb for 100M reads. KisSplice is not a full-length transcriptome assembler. This means that it will output the variable regions of the t...
2818 days ago
EUKulele: Taxonomic annotation of the unsung eukaryotic microbes
EUKulele, an open-source software tool designed to assign taxonomy to microeukaryotes detected in meta-omic samples, and complement analysis approaches in other domains by accommodating assembly output and providing concrete metrics reporting the taxonomic completeness of each sample.1225 days ago
- ...mily relationships from sequence data. RepeatModeler assists in automating the runs of RECON and RepeatScout given a genomic database and uses the output to build, refine and classify...
2816 days ago
Nemo – A stochastic, individual-base, genetically explicit simulation platform
...rticularly convenient when specifying large matrices. Many adjustments have been made for refined control of the input of parameters and data output. See updates in the manual....2772 days ago
- ...s using one of four different mappers, create differential gene (miRNA) expression profiles and cluster reads using one of several algorithm. MIRO output is furthermore compatible wit...
2769 days ago
- ...ng expanded to include more information. There are common options for most BBMap suite programs and depending on the file extension the input/output format is automatically chose...
2763 days ago
- ...to target genes using BLASTx or BWA. The reads are distributed to separate directories, where they are assembled separately using SPAdes. The main output is a FASTA file of the (in fr...
2738 days ago
- The blog is a collection of script examples with example data and output plots. R produce excellent quality graphs for data analysis, science and business presentation, publications and other purposes. Self-help codes and examples are provided. Enjoy nice graphs !!
2738 days ago
- ...apable of assembling a human genome on a desktop computer in a day. The output of Minia is a set of contigs....e looks like: ./minia -in reads.fa -kmer-size 31 -abundance-min 3 -out output_prefix Type ./minia for a...
2704 days ago
