2344 days ago
Converting BLAST output into CSV
...do something with all this BLAST output. Generally, that’s the...ograms that run on UNIX, the text output is in some specific format. I...on you are interested in from the output. Let’s conclude this t...ast-to-csv.py out.txt This outputs a spread-sheet like list of...2330 days ago
Bioinformatics Web Application Development with Perl
...may have made the CGI.pm module central, modern Perl web programming follows a stricter separation of business logic, URL and request routing, and output. The days of slinging a strin...2315 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
...w many reads go to each reference, or splitting the reads into multiple output files, one per reference. BBS...,salmonella.fa basename=out_%.fq outu=clean.fq int=tThis will produce 3 output files:out_ecoli.fq (ecol...2307 days ago
2298 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
...h; create or update file cat file — output the contents of file less fil...le with page navigation head file — output the first 10 lines of file ta...ess login ping host — ping host and output results whois domain &md...2274 days ago
Installing Bio::SCF perl module
...environment is sane... yeschecking for gawk... gawkchecking whether make sets $(MAKE)... yeschecking for gcc... gccchecking for C compiler default output file name... a.outchecking wh...2211 days ago
Learning Python Programming - a bioinformatician perspective !
...development. Python is interpreted language so the program does not need to be compiled. Interpreter parses the program code and generates the output. Python is dynamically typed...2176 days ago
LINKS scaffolder bloomfilter setting !
...ider for scaffolding (default -z 500, optional) -b base name for your output files (optional) -r Bloom f...nput file for sequences supplied in -s (optional, if none provided will output to .bloom) NOTE: BLOOM FIL...2144 days ago
Understanding BLASTn output format 6 !
BLASTn output format 6 BLASTn maps DNA against D...n -subject genome.fna -outfmt 6 BLASTn tabular output format 6 Column headers:qseq.... bitscore bit score Define your own output format by adding the option...2132 days ago