Results for "overlapping"
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PAired-eND Assembler for DNA sequences
PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence. More at https://github.com/neufeld/pandaseq2962 days ago
YASS :: genomic similarity search tool
...you can specify the seed pattern used in the search step (as provided for example by iedera). Main features of YASS are: multiple, possibly overlapping seeds and a new hit criterion...2936 days ago
- ...es that analyses Whole Exome Sequencing (WES) data to identify CNVs. EXCAVATOR2 enhances the identification of all genomic CNVs, both overlapping and non-overlapping targeted exons by integrating...
2724 days ago
- ...satisfying cut-offs (--identity and --overlap) suboptimal matches (only best match of each query to reference is kept) and removing overlapping matches on reference. In p...
2704 days ago
- ...assembly. The final sequence will correct any uncalled bases in the overlapping region using the complementary strand. When mismatches occur in the overlapping region, the base with the bet...
2670 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...nbsp; Meaningful mapping quality. Various alignment strategies (semiglobal bit-vector and Gotoh, anchored). Overlapping of reads for de novo assembly...2535 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...ab. For a C. elegans PacBio data set (only 40X are used, not the whole dataset), miniasm finishes the assembly, including reads overlapping, in ~10 minutes with 16 CPUs....2362 days ago
COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly
An efficient tool called Connecting Overlapped Pair-End (COPE) reads, to connect overlapping pair-end reads using k-mer frequencies. We evaluated our tool on 30× simulated pair-en...2353 days ago
- MARVEL consists of a set of tools that facilitate the overlapping, patching, correction and assembly of noisy (not so noisy ones as well) long reads. The assembly process can be summar...
2203 days ago
EAGLER: a scaffolding tool for long reads.
...created by any NGS assembler and a set of long reads. The long reads are used to extend the contigs present in the NGS draft and possibly join overlapping contigs. EAGLER supports both...2173 days ago
