Using Interval Trees to Query Genome Annotations by Position
To work on query related to overlapping genomic features: use IntervalTree python pkg http://informatics.malariagen.net/2011/07/07/using-interval-trees-to-query-genome-annotations-by-...3559 days ago
Genome Assembly Tools and Software - PART1 !!
...er for DNA sequences PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence. ZORRO 2.2 &nda...2695 days ago
Gap filling or Contigs extensions tools !
...kb part you're interested in. I suggest the following algorithm: 1. Start with the initial assembly C0 of the contigs you have identified as overlapping your region of interest, and...2175 days ago