Results for "pacbio smrt"
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Bioinformatics algorithms tutorials
Useful bioinformatics tutorial, such as De Bruijn Graphs for NGS AssemblyAlgorithms for PacBio ReadsSoftware and Hardware Concepts for BioinformaticsFinding us in Homolog.us (Search Algorithms)NG...3604 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap is a novel mapper targeted at aligning long, error-prone third-generation seque...gnificant improvement over the state-of-the-art for PacBio read mappers. GraphMap was a...and error profiles, including: Illumina, PacB...3226 days ago
Scaffolding of a bacterial genome using MinION nanopore sequencing
Second generation sequencing has revolutionized genomic studies. However, most genomes contain repeated DNA elements...fering substantially longer reads is emerging, notably the Pacific Biosciences (PacB...3226 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such as the PacB...2915 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-gen...umina, Applied Biosystems SOLiD, Roche 454, Ion Torrent and Pacific BioSciences SMRT. Indeed, MOSAIK was the only...2908 days ago
- This tutorial includes resources for learning more about PacBio data and bioinformatics analysis, and includes content suitable for both beginners and experts. Below are links to t...
2628 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.wikipedia.org/wiki/Sequence_asse...bles scaffolding with long-reads from third-generation sequencing technologies (PacB...2796 days ago
- Visualization has played an extremely important role in the current genomic revolution...ing did not identify a direct chromosomal fusion between these two genes. After SMRT sequencing, Ribbon shows that...
2754 days ago
- LINKS is a genomics application for scaffolding genome assemblies with long reads, such as those produced by Oxford...ld high-quality draft genome assemblies with any long sequences (eg. ONT reads, PacB...
2740 days ago
- quickmerge uses a simple concept to improve contiguity of genome assemblies based on lon...from assemblies made with illumina short reads and PacBio long reads to improve contiguities of an assembly generated with PacB...
2695 days ago
