Genome Assembly Tools and Software - PART1 !!
...from Long Gapless Reads A fast and memory-efficient method for haplotype assembly from long gapless reads, like those produced by SMRT sequencing technologies (PacBio RS II) and Oxford Nanopore...2687 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
.../MHAP Miniasm Assembler of long noisy reads (SMRT, ONT) using the Overlap-Layout...h error-containing long sequence (e.g., ONT or PacBio reads, draft genomes) Softwa...ation using assembled or unassembled Illumina, PacBio, and ONT data (based on Min...2372 days ago
2352 days ago
Frequent parameters for bioinformatics tools !
Third party executable parameters and options. Trimmomatic “ILLUMINACLIP:...:2:30:1...85 --min_window_q 65 FastQ Screen --aligner bowtie2' (bwa for PacBio) --subset 1000 (for PacB...1287 days ago
584 days ago
Bioinformatics tools for genome assembly !
There are numerous genome assembly tools available, each with its strengths and weaknesses. Here is a...data from multiple sequencing technologies, such as Illumina and PacBio. Canu: A long-read assembler optimized for PacB...287 days ago
Mitochondrial genome assembly tools !
Mitochondrial genome assembly tools are specialized software and algorithms designed to accurately reconstruct the m...ncing data. MitoHiFi: a python pipeline for mitochondrial genome assembly from PacB...244 days ago