Results for "pacbio smrt"
Bio-Scripts
# generate dotplot lastdb test/ref.fa lastal -f TAB test/ref.fa test/contigs.reduced.pacbio.fa | last-dotplot - test/contigs.reduced.pacbio.fa.ref.png lastal -f TAB test/ref.fa test/contigs.reduced.nanopore.fa | last-dotplot - test/contigs.reduced.nanopore.fa.ref.png2253 days ago
Long reads mapper bash script !
#!/bin/bash #only for LONG READS mapping #USAGE: runMapper.sh minimap2 ref.fa reads.fa/fq 48 ont...d $refFasta $longReads > $fileName.out.sam elif [ $readsType == "pacbio" ]; then $lamsaLoc aln -t $thread -T pacb...2124 days ago
Installing pb-assembly on Linux !
...# # PacBio(R) tools distributed via Bioc...newer than the currently available SMRT(R) Analysis builds. While # #...live up to the # # quality that PacBio strives for, we make no war...newer than the currently available SMRT(R) Analysis builds. While #...2035 days ago
Setting up falconUnzip conda environments for genome assembly !
...# # PacBio(R) tools distributed via Bioc...newer than the currently available SMRT(R) Analysis builds. While # #...live up to the # # quality that PacBio strives for, we make no war...newer than the currently available SMRT(R) Analysis builds. While #...1991 days ago
- Map them agaist reference avaga genome using following codes git clone https://github.com/lh3/bwa.git cd bwa; make bwa index ref.fa bwa mem -x pacbio ref.fa pacbio.fq > aln.sam bwa mem -x ont2d ref.fa ont-2D.fq > aln.sam
1726 days ago
- # make reference for randomreads.sh # randomreads.sh part of BBTools/BBMa...a.gz \ illuminanames=t addslash=t \ pacbio=t pbmin=0.13 pbmax=0.17 \ re...# make 30x haploid coverage for PacBio CLR reads # error rate from...a.gz \ illuminanames=t addslash=t \ pacb...
929 days ago
Bash script to simulate a genome !
# Reference https://github.com/chhylp123/hifiasm/issues/33 # Use Drosophila melongaster PacBio assembly cd /genetics/elbers/test/fly2...fasta.gz \ illuminanames=t addslash=t \ pacbio=t pbmin=0.13 pbmax=0.17 \ re...# make 30x haploid coverage for PacB...919 days ago
