Setting up falconUnzip conda environments for genome assembly !
...lving environment: done ## Package Plan ## environment loca...b-assembly The following packages will be downloaded: p...280.6 MB The following NEW packages will be INSTALLED: as...Downloading and Extracting Packages python-2.7.15 | 13.6...1984 days ago
1547 days ago
Bash command to install Miniconda !
...miniconda3 Unpacking payload ... Collecting package metadata (current_repodata.js...Solving environment: done ## Package Plan ## environment loca...s/main/linux-64::conda-4.7.12-py37_0 conda-package-han~ pkgs/main/linux-64::cond...1550 days ago
Bash command to install bwa, samtools, picard !
...21.8 MB The following NEW packages will be INSTALLED: _ana...Downloading and Extracting Packages certifi-2019.11.28 | 156...8.0 MB The following NEW packages will be INSTALLED: bzip...302.7 MB The following NEW packages will be INSTALLED: _r-m...1550 days ago
Bash command to install GATK, Bedtools and SnpEff !
...- gatk The following packages will be downloaded: p...92.5 MB The following NEW packages will be INSTALLED: cert...Downloading and Extracting Packages pip-20.0.2 | 1.9...install bedtools Collecting package metadata (repodata.json): don...1550 days ago
Install Nucmer on Linux / Ubuntu
...ll mummer [sudo] password for jit: Reading package lists... Done Building depen...information... Done The following additional packages will be installed: gawk...s (672 kB/s) Selecting previously unselected package gawk. (Reading database ......1544 days ago
Install python pip and numpy on Linux / Ubuntu
...one The following additional packages will be installed: libexp...-xdg python2.7-dev Suggested packages: python-crypto-doc python...lecting previously unselected package libexpat1-dev:amd64. (Readin...lecting previously unselected package python-all. Preparing to unp...1544 days ago
Install miniasm in Linux / Ubuntu
...MitoHunter$ sudo apt install miniasm Reading package lists... Done Building depen...information... Done The following additional packages will be installed: minima...(40.7 kB/s) Selecting previously unselected package miniasm. (Reading database ....1544 days ago
Installing ggplot2 and its dependencies on Ubuntu !
...1 MB * installing *source* package ‘glue’ ... ** package ‘glue’...ttes ** testing if installed package can be loaded * DONE (magrit...** R ** inst ** preparing package for lazy loading ** help **...** R ** inst ** preparing package for lazy loading ** help **...1544 days ago
1541 days ago