ANGES: reconstructing ANcestral GEnomeS maps
This page contains the software ANGES 1.01, that aims at reconstucting ancestral genome maps from homologous markers in extant related genomes. Download Program, ver...2559 days ago
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Alfred: BAM Statistics and Feature Counting
The easiest way to get Alfred is to download a statically linked binary from the Alfred github release page. Alternatively, you can build Alfred from source. Alfred dependencies...2309 days ago
DendroPy: a Python library for phylogenetic computing
...e complex multi-library phyloinformatic pipelines, or as a scripting “glue” that assembles and drives such pipelines. The primary home page for DendroPy, with detailed t...2219 days ago
SALSA: A tool to scaffold long read assemblies with Hi-C
...grating Hi-C links with assembly graphs for chromosome-scale assembly. bioRxiv, p.261149 Link For any queries, please either ask on github issue page or send an email to Jay Ghury...2166 days ago
minimap2: A versatile pairwise aligner for genomic and spliced nucleotide sequences
...a reads.fa > overlaps.paf # PacBio read overlap ./minimap2 -x ava-ont reads.fa reads.fa > overlaps.paf # Nanopore read overlap # man page for detailed command line opt...2161 days ago
CBS Comparative Microbial Genomics group - BioTools download page
he CMG-biotools system presents a stand-alone interface for comparative microbial genomics. The package is a customized operating system, based on Xubuntu 10.10, ava...2097 days ago
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DISTRUCT: a program for the graphical display of population structure
...rs, colors, and other graphical details. [Example] [Download software package (includes the manual)] (you will be directed first to a registration page and we would very much apprec...1883 days ago