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Results for "perl"

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• • Jit@jit.aber

  

  Remove the blank space from a fasta file. perl -nlwe 'tr/ //d; print if length' fileName #Delete #Space #Fasta #Perl #Oneliner

  Tags: Delete, Space, Fasta, Perl, Oneliner

  3616 days ago

• • Jit@jit.aber

  

  Bioinformatics Scripts

  Some of the useful bioinformatics scripts. For example ... contig-stats.pl is a Perl script that will automatically describe features of a sequence assembly. http://milkweedgenome.org/?q=scripts

  Tags: Bioinformatics, Computational Biology, Education, Study, Script, Perl, Python

  3355 days ago

• • Jit@jit.aber

  

  Dancer is a simple but powerful web application framework for Perl. http://www.perldancer.org/ #Perl #Framework #Website #Development

  Tags: Perl, Framework, Website, Development

  3489 days ago

• • Rahul Nayak@rahul

  

  perl -nle '$count += () = /XY[0-9]+/g; END {print $count}' inputfile #Count #Perl #Perloneliner

  Tags: Count, Perl, Perloneliner

  3642 days ago

• • Jit@jit.aber

  

  Install Bioperl on ubuntu : sudo apt-get install bioperl #Bioperl #Install #Perl

  Tags: Bioperl, Install, Perl

  3624 days ago

• • Abhimanyu Singh@abhimanyu

  

  Perl scripts for Bioinformatics http://jura.wi.mit.edu/bio/bioinfo/scripts/ #Perl #Bioinformatics #Genetics #Scripts

  Tags: Perl, Bioinformatics, Genetics, Scripts

  3623 days ago

• • Abhimanyu Singh@abhimanyu

  

  Perl one-liner for bioinformatician !!!

  With the emergence of NGS technologies, and sequencing data most of the bioinformaticians mung and wrangle around massive amounts of genomics text. There are several "standardized" file formats (FASTQ, SAM, VCF, etc.) and some tools for manipulating them (fastx toolkit, samtools, vcftools, etc.),...

  Tags: Bioinformatics, Computational Biology, Perl, NGS, Genome, Hacking, One-liner, Oneliner

  3623 days ago

• • Jit@jit.aber

  

  Force install a Perl module sudo PERL_MM_USE_DEFAULT=1 perl -MCPAN -e "CPAN::Shell->force(qw(install Nginx::Log::Entry))" #Perl #Install #Force #CPAN #Module

  Tags: Perl, Install, Force, CPAN, Module

  3617 days ago

• • Jitendra Narayan@admin

  

  Use multi-core with Perl programs http://perltricks.com/article/61/2014/1/21/Make-your-code-run-faster-with-Perl-s-secret-turbo-module #Perl #MCE #Speed #Module

  Tags: Perl, MCE, Speed, Module

  3618 days ago

• • Jit@jit.aber

  

  Count the total number of lines in a file. my $total=@{[<INFILE>]}; #Perl #Count #Number #Total #File

  Tags: Perl, Count, Number, Total, File

  3612 days ago

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