Results for "phased"
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WhatsHap: fast and accurate read-based phasing
...sed Phasing of Related Individuals). WhatsHap is easy to install It is easy to use: Pass in a VCF and one or more BAM files, get out a phased VCF. Supports multi-sample VC...2182 days ago
Purge Haplotigs: Pipeline to help with curating heterozygous diploid genome assemblies
...issue for downstream analysis whether you're working on the haploid or phased-diploid assembly. Identify p...id assembly (i.e. Canu, FALCON or FALCON-Unzip primary contigs) or on a phased-diploid assembly (i.e. FALCON...1979 days ago
HipSTR: Haplotype inference and phasing for Short Tandem Repeats
...ale sequencing data Employing a specialized hidden Markov model to align reads to candidate alleles while accounting for STR artifacts Utilizing phased SNP haplotypes to genotype an...1899 days ago
HaploTypo: a variant-calling pipeline for phased genomes
An increasing number of phased (i.e. with resolved haplotypes) reference genomes are available. However...s the haplotype correspondence for each heterozygous variant called on a phased reference genome. Availabili...1612 days ago
Supernova: generates phased, whole-genome de novo assemblies from a Chromium-prepared library.
Supernova generates phased, whole-genome de novo assemblies from a Chromium-prepared library. Please see Achieving Success with De Novo Assembly and Sys...1449 days ago
GraphUnzip: Phases an assembly graph using Hi-C data and/or long reads.
...two real datasets for the genomes of the rotifer Adineta vaga and the potato Solanum tuberosum. In all cases, GraphUnzip yielded highly continuous phased assemblies. https://www.bior...1198 days ago
