Sequanix: a dynamic graphical interface for Snakemake workflows
...o visualise standard NGS formats). A set of pipelines dedicated to NGS in the form...iginal tools to help in the creation of such pipelines including HTML reports. Stan...a GUI for Snakemake workflows (hence Sequana pipelines as well) More at https://s...1542 days ago
Nextflow: Data-driven computational pipelines
Nextflow enables scalable and reproducible scientific workflows using software containers. It allows the adaptation of pipelines written in the most common scripting languages. Its fl...1534 days ago
CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
Contig Annotation Tool (CAT) and Bin Annotation Tool (BAT) are pipelines for the taxonomic classification of long DNA sequences and metagenome assembled genomes (MAGs/bins) of both kno...1446 days ago
Genobuntu: Package for Next Generation Sequencing and Genome Assembly
...sembly tools, genome assemblers as well as post assembly tools.Commonly used biological software and example script files for different assembly pipelines have also been provided, wher...1445 days ago
FiNGS: Filters for Next Generation Sequencing
...ds that are fully configurable by the user. It ingests and emits standard variant call format (VCF) files and will slot into existing sequencing pipelines. It allows users to develop a...1161 days ago
Luigi: a Python package that helps you build complex pipelines of batch jobs.
Luigi is a Python (3.6, 3.7, 3.8, 3.9 tested) package that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization, handli...1044 days ago
982 days ago