Results for "plant"
Bio-Scripts
Download the genome from NCBI using bash script/command
...-r 's|(ftp://ftp.ncbi.nlm.nih.gov/genomes/all/.+/)(GCF_.+)|\1\2/\2_genomic.fna.gz|' > genomic_file_bacteria # -for plant curl 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/plant/assembly_summary.txt' | awk '...2530 days ago
Download the gff files from NCBI using bash script/command
...-r 's|(ftp://ftp.ncbi.nlm.nih.gov/genomes/all/.+/)(GCA_.+)|\1\2/\2_genomic.gff.gz|' > genomic_file_bacteria # -for plant curl 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/plant/assembly_summary.txt' | awk '...2521 days ago
Pack a perl program with their dependencies on Ubuntu !
...e been used to produce highly accurate de novo assemblies of hundreds of microbial genomes and highly contiguous reconstructions of many dozens of plant and animal genomes, enabling...1509 days ago
