Results for "polishing"
Blogs
List of tools frequently used while genome assembly
...g mappers minimap2 (v. 2.0rc1-r232) minimap (v. 0.2-r124-dirty) bwa (v. 0.7.12-r1039) I have used the following polishing tools Racon (v. not a...1924 days ago
Bookmarks
ONT assembly and Illumina polishing pipeline
This pipeline performs the following steps: Assembly of nanopore reads using Canu. Polish canu contigs using racon (optional). Map a paired-end Illum...2349 days ago
Minipolish: A tool for Racon polishing of miniasm assemblies
...nd very fast. However, it does not include a polishing step, so its assemblies have...pieces of long reads. Racon is a great polishing tool that can be used to clea...o takes care of some of the other nuances of polishing a miniasm assembly: Adding...1609 days ago
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Top-level pages
Some useful Bioinformatics links
...xVPv6OoLe7hn9TeUjcZ5umREOzNoPMWkfYH58RS6uxm3vm4e4BG2AA_WKW84i6egKK271NwMq-NfzA%3D%3D nanoporetech/ont-assembly-polish: ONT assembly and Illumina polishing pipeline https://github.com/...2235 days ago
Wire posts
Tags
ONT assembly and Illumina polishing pipeline
This pipeline performs the following steps: Assembly of nanopore reads using Canu. Polish canu contigs using racon (optional). Map a paired-end Illumina dataset onto the contigs obtained in the previous steps using BWA mem. Perform correction of contigs using p...Tags: ONT, assembly, Illumina, polishing, pipeline
2349 days ago
Minipolish: A tool for Racon polishing of miniasm assemblies
Miniasm is a great long-read assembly tool: straight-forward, effective and very fast. However, it does not include a polishing step, so its assemblies have a high error rate – they are essentially made of stitched-together pieces of long reads. Racon is a great polishing tool th...Tags: Minipolish, tool, Racon, polishing, miniasm, assemblies
1609 days ago
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