Results for "polyploid"
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...before 60nt. A5-miseq assumes it is assembling homozygous haploid genomes. Use a different assembler for metagenomes and heterozygous diploid or polyploid organisms. Use a different as...2828 days ago
Ranbow: a haplotype assembler for polyploid genomes
Ranbow is a haplotype assembler for polyploid genomes. It has been developed for the haplotype assembly of th...me, which is highly heterozygous. Ranbow can also be applied to other polyploid genomes. After a first phasin...2175 days ago
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Genome Assembly Tools and Software - PART2 !!
...le-Basis Algorithm for Accurate Haplotype AssemblyHapCompass for polyploid genomes can currently be used...DE is a tool used to estimate contig ploidy and allele dosage in polyploid genome assemblies. ELOPER 1....2696 days ago
Bio-Scripts
Generate simulated polyploid genome !
#Generate 3% divergence msbar -point 4 -count 16558 toy.fasta > toyheterozygous3percent.fasta #Cat both files cat toy.fasta toymutated3percent.fasta > toyheterozy...2063 days ago
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Ranbow: a haplotype assembler for polyploid genomes
Ranbow is a haplotype assembler for polyploid genomes. It has been developed for the haplotype assembly of the hexaploid sweet potato genome, which is highly heterozygous. Ranbow can also be applied to other polyploid genomes. After a first phasing, Ranbow utilizes the assembled haplotypes to imp...Tags: Ranbow, haplotype, assembler, polyploid, genomes, Assembly, NGS
2175 days ago
ALLHiC: Phasing and scaffolding polyploid genomes based on Hi-C data
The major problem of scaffolding polyploid genome is that Hi-C signals are frequently detected between allelic haplotypes and any existing stat of art Hi-C scaffolding program links the allelic haplotypes together. To solve the problem, we developed a new Hi-C scaffolding pipeline, called ALLHIC,...Tags: ALLHiC, Phasing, scaffolding, polyploid, genomes, Hi-C, data, assembly
1973 days ago
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