X BOL wishing you a very and Happy New year

Alternative content

Our Sponsors



Download BioinformaticsOnline(BOL) Apps in your chrome browser.




  • Bookmarks
  • BioStar
  • ALLHiC: Phasing and scaffolding polyploid genomes based on Hi-C data

ALLHiC: Phasing and scaffolding polyploid genomes based on Hi-C data

https://github.com/tangerzhang/ALLHiC/wiki

The major problem of scaffolding polyploid genome is that Hi-C signals are frequently detected between allelic haplotypes and any existing stat of art Hi-C scaffolding program links the allelic haplotypes together. To solve the problem, we developed a new Hi-C scaffolding pipeline, called ALLHIC, specifically tailored to the polyploid genomes. ALLHIC pipeline contains a total of 5 steps: prunepartitionrescueoptimize and build.