1550 days ago
Find and replace in multifasta or fasta header with perl onliner
You have a fasta file and you want to replace: "|" You are told to replace that by "_" perl -i -p -e "s/\|/_/g" genome.fasta -i = inplace editing -p = loop over lines and print each line (after processing) -e = command line script1614 days ago
1552 days ago
Bash script to download SRA file !
...icular compressed format (SRA!) that isn't directly compatible with any downstream tools, so it's necessary to put things into FASTQ for further processing. The --split-files part of th...1558 days ago
Install Nucmer on Linux / Ubuntu
..._3.23+dfsg-3_amd64.deb ... Unpacking mummer (3.23+dfsg-3) ... Setting up gawk (1:4.1.4+dfsg-1build1) ... Setting up mummer (3.23+dfsg-3) ... Processing triggers for man-db (2.8.3-2u...1549 days ago
Install python pip and numpy on Linux / Ubuntu
...Setting up python-dev (2.7.15~rc1-1) ... Setting up libpython-all-dev:amd64 (2.7.15~rc1-1) ... Setting up python-all-dev (2.7.15~rc1-1) ... Processing triggers for man-db (2.8.3-2u...1549 days ago
Install miniasm in Linux / Ubuntu
...g to unpack .../minimap_0.2-3_amd64.deb ... Unpacking minimap (0.2-3) ... Setting up minimap (0.2-3) ... Setting up miniasm (0.2+dfsg-2) ... Processing triggers for man-db (2.8.3-2u...1549 days ago
1540 days ago
Install python-numpy python-scipy python-matplotlib on Ubuntu !
...(0.19.1-2ubuntu1) ... Setting up python-matplotlib (2.1.1-2ubuntu3) ... Setting up python-tk (2.7.17-1~18.04) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Processing triggers for man-db (2.8.3-2u...1540 days ago
1538 days ago