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2363 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
...s pipeline is open-source and freely available at http://sdittami.altervista.org/taxoblast and via SourceForge (https://sourceforge.net/projects/taxoblast).2355 days ago
poRe: an R package for the visualization and analysis of nanopore sequencing data
...Windows laptop attached to the device. Availability and implementation: poRe is released as a package for R at http://sourceforge.net/projects/rpore/ . A tutorial and...2354 days ago
dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes.
...eneration sequencing (NGS) data. The initial approaches to assembling HP genomes were proposed in the pre-NGS era and are not well suited for NGS projects. To address this limitation,...2327 days ago
AIRVF: a filtering toolbox for precise variant calling in Ion Torrent sequencing
...in-house commercial solution, with a minimal loss of sensitivity The program with a detailed manual is available at https://sourceforge.net/projects/airvf/2326 days ago
mojolicious: a next generation web framework for the Perl programming language.
...ed upon years of experience developing Catalyst, free and open source. Hundreds of 3rd party extensions and high quality spin-off projects like the Minion job...2304 days ago
Metassembler: merging and optimizing de novo genome assemblies
...ultiple whole genome de novo assemblies into a combined consensus assembly using the best segments of the individual assemblies. Genome assembly projects typically run multiple algori...2189 days ago
fragScaff: Genome Assembly with Contiguity Preserving Transposition
...he need for laborious in vivo cloning steps. Further information about fragScaff, including source code, is available at:https://sourceforge.net/projects/fragscaff/files. Manuscript...2183 days ago
Merqury: reference-free quality and phasing assessment for genome assemblies
Often, genome assembly projects have illumina whole genome sequencing reads available for the assembled individual. The k-mer spectrum of this read set can be used for independentl...1429 days ago