Computational Proteomics : Lets remember the basics
I spend some of my valuable time in computational drug designing sector. I remember my initial proteomics days, playing with interactive protein visu...3501 days ago
List of gene ontology software and tools
...hways, and TRANSFAC motifs to a user-specified group of genes, proteins or microarray probes. g:GOSt...imental data. MetaCore is based on a curated database of human protein-protein, protein-DNA interactions, transcription factors, signa...3724 days ago
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Master Thesis: Trans-membrane topology prediction through Markov based decoders
Abstract: Background/Motivation: The dearth of structural information on alpha helical membrane protein (MPs) has hindered thus far t...ic prediction of trans-membrane (TM) protein structure. While algorithm fo...equences in a standard dataset of 86 proteins wit...3959 days ago
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how could be a molecular dynamics be helpful studying the protein's conformation
give your views3502 days ago
Bio++ : C Language libraries for your biological need
...stract and fluent to describe algorithms and interactions in a wide variety of env...ts, with various Alphabet support (DNA, RNA, Proteins, Codons, any 'Word' of a giv...92 + any PAML-formated model description for proteins, with possibility to estimate equ...3962 days ago
BioRuby :Ruby packages for biologist
BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment, database parsing, and other Bioinformatics tools.BioRuby project provides an integ...3961 days ago
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Chromatin: From nucleosomes to chromosomes, 30 April - 2 May 2014
EMBL-EBI announced the Wellcome Trust Scientific Conference Chromatin: From nucleoso...in and chromosome structure, epigenetic gene regulation and chromosome fibre interactions to explore outstanding questi...3939 days ago
Vaccination can be dangerous sometimes !!!
It is always believed that vaccination is permanent cure from specific diseases, but recent finding suggest someth...me of those antibodies also targeted the stem of H1N1’s haemagglutinin protein, hel...3909 days ago
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems, Society, Climate), a network of 13 laboratories of the Paris-Saclay...l to establish a link between sequence variation, functional variation, gene/protein expr...3963 days ago
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The Best Bioinformatics / Computational Biology Quotes
Bioinformatician are not anti-social; We are just genome friendly. Bioinformatician would love to change the bi...be the next curator! Beware of computational biologist they screw genes and protein. Wa...3734 days ago
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Computer Theory & Genetics: George Chao at TEDxUMNSalon
...ciplines as well as in Japan. Some of these researches include developmental genetics in Drosophila, computational techniques for analyzing protein interactions, and helping with the develop...3929 days ago
Parse a genbank file using regular expressions
#! /usr/local/bin/perl -w $genbank = "genbank_file.txt"; open (GENBANK, $genbank) || die "can...$cds_end\n"; } elsif (/(\/translation=")(.*)/) { # protein product begins print "Translation: "; $protein = $2...2931 days ago
Retrieve NCBI GenBank records with a range of accession numbers
#!/usr/bin/perl #FILE: ncbi_search.pl #AUTH: Paul Stothard (paul.stothard@gmail.com) use warnings; use strict; use Getopt::Long; use LWP::Simple; use URI::Escap...2930 days ago
Tryst with a Bioinformatician # Dr Altan Kara
...sed on this profile. Alterations in the gene, transcript, protein, and metabolite profiles betw...ing the interaction between the prokaryotic two-component proteins. To be able to accurately predict the interactions between these proteins, I cre...2376 days ago
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Comment on "FRODOCK 2.0: fast protein–protein docking server"
A web applet for browsing protein-protein interactions was implemented. It enables the display of interaction relationships, based upon neighboring distance and biological function. Availability: The Java applet is available at http://www.charite.de/bioinformatics1397 days ago