Results for "protein interactions"
Blogs
Computational Proteomics : Lets remember the basics
I spend some of my valuable time in computational drug designing sector. I remember my initial proteomics days, playing with interactive protein visu...3485 days ago
List of gene ontology software and tools
...hways, and TRANSFAC motifs to a user-specified group of genes, proteins or microarray probes. g:GOSt...imental data. MetaCore is based on a curated database of human protein-protein, protein-DNA interactions, transcription factors, signa...3707 days ago
- +17 more Blogs
Bookmarks
- Bioinformatics is developing very rapidly. With new tools and software it is, now a day...nformatics: assembling genomes, comparing DNA and protein sequences, predicting genes,...analyzing genome rearrangements, and identifying proteins. P...
3942 days ago
- Enzyme Portal- To look for information about the biology of a protein with enzymatic activity. The enzyme portal integrates many resources, most of them hosted by EBI and also externa...
3894 days ago
- +88 more Bookmarks
Files
Master Thesis: Trans-membrane topology prediction through Markov based decoders
Abstract: Background/Motivation: The dearth of structural information on alpha helical membrane protein (MPs) has hindered thus far t...ic prediction of trans-membrane (TM) protein structure. While algorithm fo...equences in a standard dataset of 86 proteins wit...3942 days ago
- Protein is a part of every cell in your body, and no other nutrient plays as many different roles in keeping you alive and healthy. Protein is t...
3551 days ago
Discussion topics
how could be a molecular dynamics be helpful studying the protein's conformation
give your views3486 days ago
Pages
Bio++ : C Language libraries for your biological need
...stract and fluent to describe algorithms and interactions in a wide variety of env...ts, with various Alphabet support (DNA, RNA, Proteins, Codons, any 'Word' of a giv...92 + any PAML-formated model description for proteins, with possibility to estimate equ...3945 days ago
BioRuby :Ruby packages for biologist
BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment, database parsing, and other Bioinformatics tools.BioRuby project provides an integ...3945 days ago
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Top-level pages
- The completion of the first human genome drafts was just a start of the modern DNA sequencing era which resulted i...to learn new biologically suitable language to handle ever growing genome or protein sequ...
3945 days ago
- ...h as determination of DNA and protein sequences, investigation of protein functions, development of pha...the subcellular location of a protein. The ultimate goal of sequence an...dicting protein–protein interactions; analysing single nucleotide...
3945 days ago
- +29 more Top-level pages
Wire posts
News
Chromatin: From nucleosomes to chromosomes, 30 April - 2 May 2014
EMBL-EBI announced the Wellcome Trust Scientific Conference Chromatin: From nucleoso...in and chromosome structure, epigenetic gene regulation and chromosome fibre interactions to explore outstanding questi...3922 days ago
Vaccination can be dangerous sometimes !!!
It is always believed that vaccination is permanent cure from specific diseases, but recent finding suggest someth...me of those antibodies also targeted the stem of H1N1’s haemagglutinin protein, hel...3892 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems, Society, Climate), a network of 13 laboratories of the Paris-Saclay...l to establish a link between sequence variation, functional variation, gene/protein expr...3946 days ago
- ...unctional effects. Then we will try to facilitate unravelling complex interactions between alleles, for exa...e with high throughput sequencing analysis methods, machine learning, protein interaction databases, perl/python...
3946 days ago
- +61 more Opportunity posts
ResearchLabs posts
- ...erse set of problems in computational molecular biology. They are particularly interested in predicting specificity in protein interactions and uncovering how molecular interactions and functions vary across con...
3946 days ago
- ...ve image analysis and cytosim, a computer simulation to study cellular architecture from a mechanistic angle, modeling the interactions of microtubules and related proteins such as molecular motors. In the...
3946 days ago
- +25 more ResearchLabs posts
Fun
The Best Bioinformatics / Computational Biology Quotes
Bioinformatician are not anti-social; We are just genome friendly. Bioinformatician would love to change the bi...be the next curator! Beware of computational biologist they screw genes and protein. Wa...3718 days ago
Video
- http:--www.biotechnology.jhu.edu- Tutorial for PSI-BLAST, an extension of BLAST that uses matrix algebra. BLAST is a cornerstone bioinformatics tool at NCBI. BLAST is the Basic Local Alignment Search tool and will protein and DNA sequences that are related to a sequence that the user provides.
3906 days ago
Computer Theory & Genetics: George Chao at TEDxUMNSalon
...ciplines as well as in Japan. Some of these researches include developmental genetics in Drosophila, computational techniques for analyzing protein interactions, and helping with the develop...3913 days ago
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Bio-Scripts
Parse a genbank file using regular expressions
#! /usr/local/bin/perl -w $genbank = "genbank_file.txt"; open (GENBANK, $genbank) || die "can...$cds_end\n"; } elsif (/(\/translation=")(.*)/) { # protein product begins print "Translation: "; $protein = $2...2914 days ago
Retrieve NCBI GenBank records with a range of accession numbers
#!/usr/bin/perl #FILE: ncbi_search.pl #AUTH: Paul Stothard (paul.stothard@gmail.com) use warnings; use strict; use Getopt::Long; use LWP::Simple; use URI::Escap...2913 days ago
- +8 more Bio-Scripts
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
...sed on this profile. Alterations in the gene, transcript, protein, and metabolite profiles betw...ing the interaction between the prokaryotic two-component proteins. To be able to accurately predict the interactions between these proteins, I cre...2359 days ago
Groups
Ruby is a dynamic, reflective, general-purpose object-oriented programming language that combines syntax inspired...an. BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequ...3917 days ago
This group is being designed to cover some of the common algorithms underlying the foll...nformatics: assembling genomes, comparing DNA and protein sequences, predicting genes,...analyzing genome rearrangements, and identifying proteins....3899 days ago
Tags
- The group develops algorithms for a diverse set of problems in computational molecular biology. They are particularly interested in predicting specificity in protein interactions and uncovering how molecular interactions and functions vary across context, organisms and individuals. Links: htt...
Tags: Mona, protein interactions, molecular interactions
3946 days ago
Comments
Comment on "FRODOCK 2.0: fast protein–protein docking server"
A web applet for browsing protein-protein interactions was implemented. It enables the display of interaction relationships, based upon neighboring distance and biological function. Availability: The Java applet is available at http://www.charite.de/bioinformatics1380 days ago
