Results for "protein interactions"
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Method in Comparative genomics !!
We present methods for the automatic determination of genome correspondence. The algori...ge. We present methods for the identification of protein-coding genes based on their p...ssure to conserve the reading frame of functional proteins and...2748 days ago
- Gene finding in eukaryotic genomes is notoriously difficult to automate. The task is to design a work flow with a minimal set of tools that would reach state-of-the-art pe...
1965 days ago
- HybPiper was designed for targeted sequence capture, in which DNA sequencing libraries are enriched for gene regio...f the sample for each target region, and a separate file with the translated protein sequ...
2753 days ago
- Motif based sequence analysis suits The MEME Suite allows the biologist to disco...motifs in collections of unaligned nucleotide or protein sequences, and to perform a w...ite supports motif-based analysis of DNA, RNA and protein sequ...
2704 days ago
- MetaBAT, An Efficient Tool for Accurately Reconstructing Single Genomes from Complex..., or metagenome binning, enables the study of individual organisms and their interactions. Here we developed an automat...
2631 days ago
- BioDownloader is a program for downloading and/or updating files from ftp/http servers. The program has unique fea...settings for common bioinformatics file-synchronization needs, including the Protein Data...
2640 days ago
- Our basic strategy in building homology maps is to use exons that are orthologous in multiple genomes as map "anch...LAT to do this all-vs-all comparison with alignments being performed in protein spac...
2659 days ago
FSA: Fast Statistical Alignment
FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences. Much a...iously available only for small-scale analyses of proteins or...2659 days ago
- Circos plot tool (J-Circos) that is an interactive visualization tool that can plot...UI. J-Circos will enable biologists to better study more complex chromosomal interactions and fusion transcripts that a...
2648 days ago
- DIAMOND is a sequence aligner for protein and translated DNA searches and functions as a drop-in replacement for the NCBI BLAST software tools. It is suitable for protein-prot...
2579 days ago
