Results for "protein modeling"
Top-level pages
List of In-silico Binding Site Prediction Tools
...from the 9,708 non-redundant protein entries in the PDB database....redicting functional sites in protein structures are increasingly b...ted ligand docking or in situ modeling. Comparing the shape similar...me an Van der Waals volume of proteins using a Monte carlo algorithm...3744 days ago
Next generation sequencing in R or bioconductor environment
...yesPeak is a peak calling package for identifying DNA binding sites of proteins in ChIP-Seq experiments. Its...ns bound by transcription factors. PICS identifies enriched regions by modeling local concentrations of direc...3625 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo and reference ass...cluding Smith-Waterman-Gotoh) of DNA/protein against a reference. Authors...finding near exact matches in DNA or protein databases using a hash table...., indicating the location of a bound protein...3519 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iOS app that allows for the opening and an...the interactome browser, is a project that offers protein-protein physical/enzymatic interactio...tion such as Gene Ontology, mutant phenotype, and protein...3541 days ago
List of Biotechnology Research Laboratory, University, and Centre in India
DEPARTMENT OF BIOTECHNOLOGY Centre For DNA Fingerprinting And Diagnostics (CDFD),...e Center for Artificial Intelligence and Robotics Centre for Mathematical Modeling and Computer Simulation (CSIR...2571 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo and reference a...cluding Smith-Waterman-Gotoh) of DNA/protein against a reference. Authors...finding near exact matches in DNA or protein databases using a hash table...., indicating the location of a bound protein...3243 days ago
Comprehensive list of visualization tools for biological pathways
...rstand the different processes inside a cell: proteins exert their function not in...ets http://www.caleydo.org/ CellDesigner A modeling tool for biochemical networks...nyurl.com/IngenuityPath JDesigner Graphical modeling environment for biochemical r...2287 days ago
Binding Site Prediction in Protein !
The interaction between proteins and other molecules is fundamental to all...n prediction of interaction sites on protein surface and tools for predict...ification of pockets and cavities in proteins structure, and quantitation...-based technique for the analysis of protein...2202 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ticallys instead of using ad-hoc modeling; effects are integrated at t...ed with predicted transcript and protein effects using third party too...ct of amino acid substitution on protein; Calculates Bayes posterior pr...Prot and PDB along with homology modeling Input: FASTA protein sequenc...2909 days ago
Genome Assembly Tools and Software - PART1 !!
...is a novel de novo assembler by modeling the transcriptome assembly p...r targeting assembly of specific protein-coding genes using a graph st...bining both de Bruijn graphs and protein HMMs. The inclusion of HMM in...d contigs to the query reference protein. GRASP achieves much higher se...2686 days ago
