Results for "pyrosequencing data"
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CNIDARIA: fast, reference-free phylogenomic clustering
Motivation: Identification of biological specimens i...ethods analyse unprocessed sequencing data without relying on prior know...clustering genomic and transcriptomic data with no limitation on ge-nome...plementary information: Supplementary data are available at Bioinformati...2893 days ago
- In a nutshell Anvi’o is an analysis and visualization platform for ‘omics data. Please find the methods pap...An analysis and visualization platform for 'omics data http://merenlab.org/proj...
2893 days ago
- Horizontal gene transfer (HGT), the transfer of genetic material between organisms, is cruci...hen compared the method to existing HGT detection tools using a larger strain data set. When combined with addi...
2887 days ago
Linux command line exercises for NGS data processing
The purpose of this tutorial is to introduce students to the frequently used tools for NGS a...rcises as it is a language in itself and is used more often to manipulate NGS data as compared to the other comm...2887 days ago
- SAMtools: Primer / Tutorial by Ethan Cerami, Ph.D.keywords: samtools, next-gen, next-generat...eaning that you only need to install SAMtools, and no other tools, and sample data sets are provided. Terms in b...
2886 days ago
- _A5-miseq_ is a pipeline for assembling DNA sequence data generated on the Illumina sequencing platfo...ccurate results, A5-miseq requires Illumina data with certain characteristics....ssembler if a tool like FastQC reports your data quality is dubious. You have...
2830 days ago
- Recent studies of the human genome have indicated th...egulatory elements. These interaction datasets are important resources t...lic ontologies, making sense of these datasets demands integrative and e...e functional genomics and interaction datasets, 3) querying network comp...
2882 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
Kraken is an ultrafast and highly accurate program for assigning taxonomic labels to metagen...undance estimation programs, which only classify small subsets of metagenomic data. Using exact alignment of k-m...2882 days ago
- CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biolo...per-quantile normalization on expression data or convert genome wide gene e...on to z-scores when comparing expression data from different platforms. Mo...
2880 days ago
- The greengenes web application provides access to the 2011 versio...browsing, blasting, probing, and downloading. The data and tools presented by greeng...ser, you can use greengenes to keep your own local database current.
2880 days ago
