Results for "pyrosequencing data"
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Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iOS app...teractions, COSMIC mutations, and CNV data for cell lines. Does not require a network connection for local databases. View and search PubMed...ed, Genomic Variations and many other databases to retrieve up-to-date a...3535 days ago
- Pathway Analysis is usually performed with aim to en...omics, transcriptomics and proteomics data, interactions between genes i...ation in one of the pathway knowledge databases (KEGG,Reactome,Panther,B...c/Pathways_2014_Module2.pdf Impotant Database and Tools: GeneMANIA, Cy...
3490 days ago
A guide for complete R beginners !
This tutorial is intended to introduce users quickly to the basic...ted script to perform again and again on different data Disadvantages Lack...ation (Optional) Download and save the tutorial data set from http://bioinforma...3355 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workb...short sequences to a sequence database, such as the human refere...functions to handle ABI SOLiD data. Written by Heng Li from the.... Supports Illumina and SOLiD data. De novo Align/Assemble * AB...nding sites based on ChIP-Seq data. (C++) * SISSRs - Site Identi...3237 days ago
Comprehensive list of visualization tools for biological pathways
The study of biological pathways is a key to...one leading method in -omics data analysis and visualization....work targeted at biomolecular data. Visualization of interdepend...bsp; Visualizing multi-omics data in metabolic networks https:...ronment composed of a central database and a visual editor, buil...2281 days ago
- Reformat is a member of the BBMap/BBTools package. It is a multip...designed for converting reads or other nucleotide data between different formats. It...rleaved files It is multithreaded and can process data at over 500 megabytes per sec...
2708 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
Commercial tools Strand NGS offers man...other aligners Aligns exome data and performs variant calling...BED, Agilent files, NimbleGen data summary files, VCF files, Imp...om high-throughput sequencing datasets; calls variants found in...”; no actual expression data used, only in silico expressi...2903 days ago
- Bash Script source: https://gist.github.com/santhilalsubhash/367befcf5216be4b1fd9 ....txt) Note: You can download GTF files from http://www.ensembl.org/info/data/ftp/index.html
2100 days ago
- alignment: the mapping of a raw sequence rea...ressed format for storing SAM data. BCF Format: Binary call for...ressed format for storing VCF data. CIGAR String: Compact Idios...rmat for storing raw sequence data. For example, the FASTA file...des multiple elements of meta-data regarding a read and its alig...
2863 days ago
Genome Assembly Tools and Software - PART1 !!
...ory saving and convenience of data inquiry, high-throughput short reads data is always initially formatted...wever, assembling metagenomic datasets has proven to be computat...ide Assembler for Metagenomic Data SFA-SPA is a suffix array...me high-throughput sequencing datasets. SPAdes 3.6.2 &ndash...2680 days ago
