3940 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...754-60, 2009. PubMedCentral Improving SNP discovery by base alignment quality. Li H, Bioinformatics 27(8):1...lan and Hall, Bioinformatics 26:841-842, 2010. Publisher Website Data quality assessment, filtering, and co...3772 days ago
List of In-silico Binding Site Prediction Tools
...edness. The method was applied to a representative set of protein-ligand complexes and their corresponding apo-protein structures to evaluate the quality of binding-site predictions....3737 days ago
Next generation sequencing in R or bioconductor environment
...tIV: Documentation ShortRead The ShortRead package provides input, quality control, filtering, parsing,...meGraphs: Plotting genomic information from Ensembl TileQC: Flow Cell Quality Visualization rtracklayer: R...3617 days ago
Commercial and public next-gen-seq (NGS) software
...s. ALLPATHS is a whole genome shotgun assembler that can generate high quality assemblies from short reads....nces sequencing machines. It was designed to assign more accurate base quality estimates to the 454 pyrosequ...3511 days ago
Apps for Busy Bioinformatics Researchers !!!
...ols like Blast, this app allows you to analyze, and also determine the quality of your sequencing files. Th...ols like Blast, this app allows you to analyze, and also determine the quality of your sequencing files. Th...3534 days ago
A guide for complete R beginners !
...application specific tasks. e.g. analysis of microarray experiments and Next-Gen sequencing (bioconductor: including Bioseq group). Presentation quality graphics Save as a png, pd...3354 days ago
Software packages for next gen sequence analysis
...s. ALLPATHS is a whole genome shotgun assembler that can generate high quality assemblies from short reads....nces sequencing machines. It was designed to assign more accurate base quality estimates to the 454 pyrosequ...3235 days ago
2706 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...rms base trimming, alignment, quantification, quality analysis, statistics, and vis...- data from NCBI Basepair Offers high quality workflows for all common NGS...Samtools or similar program Output: VCF QualitySNPng Description: detectio...2901 days ago