Results for "reactome"
Blogs
List of gene ontology software and tools
...edu.cn/easygo/ g:GOSt (Institute of Computer Science, University of Tartu) g:GOSt retrieves most significant Gene Ontology (GO) terms, KEGG and REACTOME pathways, and TRANSFAC motifs...3710 days ago
Bookmarks
- REACTOME is an open-source, open access, manually curated and peer-reviewed pathway da...enome analysis, modeling, systems biology and education. Founded in 2003, the Reactome project is led by Lincoln Ste...
1952 days ago
Top-level pages
- ...n the information in one of the pathway knowledge databases (KEGG,Reactome,Panther,BioCarta, Panther,GO,...scape, IPA and Metacore (Commerical ), Pathway Commons, Reactome ,Panther, BioCyc, WikiPathway...
3496 days ago
Comprehensive list of visualization tools for biological pathways
...nd an integration framework http://www.cs.bilkent.edu.tr/~patikaweb/ Reactome SkyPainter Visualizati...of over-represented pathways and reactions from gene lists http://www.reactome.org/skypainter-2 WikiPathway...2287 days ago
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Wire posts
Tags
- Pathway Analysis is usually performed with aim to enrich the genes with their functional information and reveal the underlying biological mechanisms pursue by genes. Pathway Analysis is not only limited to what biological pathways a particular set of expressed genes follow but also to disclose th...
Tags: pathway enrichment, kegg, reactome, go, blast2go, RNA-Seq, RNA, Sequencing
3496 days ago
Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
----------- Gene Set Clustering based on Functional annotation GeneSCF serves as command line tool for clustering the list of genes given by the users based on functional annotation (Gene Ontology, KEGG, REACTOME and NCG 4.0). It requires gene list in the form of Entre...Tags: Functional annotation, real-time enrichment analysis, KEGG, GO, GeneOntology, REACTOME, cancer db
2872 days ago
Comments
Comment on "List of gene ontology software and tools"
GeneSCF serves as command line tool for clustering list of genes based on functional annotation (Geneontology, KEGG, REACTOME and NCG). This tool requires gene list in the form of Entrez Gene IDs or Official gene symbols as a input. http://genescf.kandurilab.org/1492 days ago
- ...database USAGE: ./prepare_database -db=[GO_all|GO_BP|GO_MF|GO_CC|KEGG|REACTOME|NCG] -org=[see,org_codes_help...========= [-db= | --database=] Options:[GO_all|GO_BP|GO_MF|GO_CC|KEGG|REACTOME] [-org= | --organism=] Optio...
2558 days ago
