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Comment on "Run miniasm assembler on nanopore reads !"
Must read paper https://genome.cshlp.org/content/27/5/737.full2176 days ago
Comment on "SPAdes hybrid genome assembly"
use SPAdes to assemble the data. SPAdes is a swiss-army knife of genome assembly tools, and by default includes read correction. This takes up lots of RA...2183 days ago
Comment on "Run miniasm assembler on nanopore reads !"
urbe@urbo214b[allONT] minimap2 -xava-ont both.fastq both.fastq -t20 -X > AONT.paf [][M::mm_idx_gen::107.693*1.96] collected minimizers[M::mm_idx_gen::117.963*3.34] sort...2290 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
urbe@urbo214b[genome] graphmap align -h []GraphMap - A very accurate and sensitive long-read, high error-rate sequence mapperGraphMap Version: v0.5.2Build date: Jun 6 2017...2301 days ago
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Comment on "Various scholarships around the world !!"
The Polonsky Academy at the Van Leer Jerusalem Institute will award up to six Polonsky Postdoctoral Fellowships in the humanities or social sciences for up to five years,...2670 days ago
Comment on "Structural variation: the hidden genomic treasure"
I like this tool GRIDSS: the genomic rearrangement identification software suite. A high-speed next-gen sequencing structural variation caller. GRIDSS calls vari...2711 days ago