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Comment on "Run miniasm assembler on nanopore reads !"
Must read paper https://genome.cshlp.org/content/27/5/737.full2181 days ago
Comment on "SPAdes hybrid genome assembly"
use SPAdes to assemble the data. SPAdes is a swiss-army knife of genome assembly tools, and by default includes read correction. This takes up lots of RAM, so we ar...2188 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...3608.342 sec; CPU: 67037.124 securbe@urbo214b[allONT] ~/Tools/miniasm/miniasm -f both.fastq AONT.paf > AONT.gfa [][M::main] ===> Step 1: reading read mappings <===[M::ma_hit_re...2295 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...<reference_file> -d <reads_file> -o <output_sam_p...xsec is also generated. -d, --reads STR Path to the reads file....ys rebuild index even if it already exists in given path. [false...E-value. If E-value > FLT, read will be called unmapped. If F...2306 days ago
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Comment on "Various scholarships around the world !!"
...work; curriculum vitae, including list of publications; complete contact information, including phone numbers, for three possible referees. Read more http://www.polonsky.van...2675 days ago
Comment on "Structural variation: the hidden genomic treasure"
...n sequencing structural variation caller. GRIDSS calls variants based on alignment-guided positional de Bruijn graph break-end assembly, split read, and read pair evidence. https://githu...2716 days ago