Results for "read"
Bio-Scripts
...g: java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_a...ol determines the barcode for each read in an Illumina lane. I...Calculate the fraction of reads coming from cross-sample con...and setting MAPQ to 0 for unmapped reads ClipReads...2068 days ago
- library(vcfR) # Input the files. vcf
2053 days ago
- ...fgets( line, MAXLINE, fp); //read in label ^~~~~~~~~~~~~~...fgets( line, MAXLINE, fp); //read in label ^~~~~~~~~~~~~~...fgets( line, MAXLINE, fp); //read in label ^~~~~~~~~~~~~~.../../../src/shared concentrations.o ReadCommandLine.o InputFileReader....
2019 days ago
- #!/bin/bash Plot the coverage script chr=$1 start=$2 end=$3 samtools depth deduped_MA605.bam > deduped_MA605.coverage awk '$1 == $chr {print $0}' deduped_M...
1996 days ago
- ...e node-pseudomap node-qs node-read node-read-package-json node-r...e node-pseudomap node-qs node-read node-read-package-json node-r...tu bionic/universe amd64 node-read all 1.0.7-1 [4,572 B]...ously unselected package node-read. Preparing to unpack .../67-...
1545 days ago
Bash script to alignment of short reads against reference genome !
...#alignment with bwa: bwa mem -t $threads -R '@RG\tID:K12\tSM:K12' --- this says "align using so many threads" and also "give the reads th...o BAM: samtools view -b - --- this reads SAM from stdin (the - specif...l tell it we're working with short read data using -ax sr:1552 days ago
Installing ggplot2 and its dependencies on Ubuntu !
...refix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c read.c -o read.o gcc -std=gnu99 -I/usr/shar...1542 days ago
To convert just one specific read group to fastq
..., | grep SRR | head -$N > selected.txt # Store the data in the reads folder. mkdir -p reads # Download the SRR data f...nto one. samtools merge -f all.bam bam/*.bam # Investigate the readgroups in the header. echo ""...1535 days ago
- library(vcfR) vcf_file
1518 days ago
- ...79748ebdffd Step 9/12 : RUN cpanm install File::chdir && cpanm install lib::abs && cpanm install File::Remove && cpanm install Spreadsheet::Read && cpanm install Statisti...
1501 days ago
