2356 days ago
NanoSim: nanopore sequence read simulator based on statistical characterization.
NanoSim, a fast and scalable read simulator that captures the technology-specific feat...sequencing technology. The first step of NanoSim is read characterization, which provi...ive alignment-based analysis and generates a set of read...2346 days ago
Meraculous: Haplotype-sensitive Assembly of Highly Heterozygous genomes.
Meraculous is a whole genome assembler for Next Generation Sequencing data geared for large genomes. It is a hybrid k-mer/read-based assembler that capitali...y utilizing lightweight data structures and multi-threade...2344 days ago
MeDuSa: a multi-draft based scaffolder
MeDuSa (Multi-Draft based Scaffolder), an algorithm for genome scaffolding. MeDuSa exploits information obtained f...lysis (e.g. their phylogenetic relationships) or the availability of paired end read...2288 days ago
2338 days ago
Seal: SEquence ALignment evaluation suite
Seal is a comprehensive sequencing simulation and alignment tool eva...te alignment algorithms, including: Reading a pre-existing reference g...repeat variability rate). Simulating reads from random locations in the...ent tool and calculating the number of reads...2330 days ago
ECTOOLS: Long Read Correction and other Correction tools
Long Read Correction and other Correction tools This package is a loose collection of scripts. To run...rt, the correction algorithm takes as input the unitigs from a short read assembly and uses them to correct long read...2328 days ago
LRCstats: Long Read Correction Statistics
LRCstats is an open-source pipeline for benchmarking DNA long read correction algorithms for long reads outputted by third generatio...d by Pacific Biosciences. The reads produced by third generation...ed by Illumina. However, long reads are plagued by high error ra...thers, and developers of long read...2328 days ago
proovread : large-scale high-accuracy PacBio correction through iterative short read consensus
proovread : large-scale high-accuracy PacBio correction through iterative short read consensus outperforms PacBioToCA/LSC in terms of accuracy and c...dat HiSeq/MiSeq (100-500bp) Unitigs 454, ... proovread...2328 days ago
Dot, an interactive viewer for genome-genome comparison
Dot, an interactive dot plot viewer that allows genome scientists to visualize genome-genome alignments in order t...a file to a more streamlined coordinates file with an index that enables Dot to read...2319 days ago