Results for "read depth"
Top-level pages
Awk for Bioinformatician and computational biologist
Awk is a programming language which allows easy manipulation of structure...The working of Awk is as followsAwk reads the input files one line at...as follows: BEGIN { Actions before reading the file}{Actions for ever...er file in addition to the one you are readi...2273 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can...fields with any values) Porting to Python 3: An In-Depth Guide (2.6 - 2.x & 3...ling For Kids (3.x) Suporting Python 3: An In-Depth Guide (2.6 - 2.x & 3...2248 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | Bioinformatics | Oxford Ac...axonomy/term/131 De novo long-read assembly of a complex animal...TULIP - The Uncorrected Long read Itegration Pipeline https://...apping of nanopore sequencing reads with GraphMap | Nature Commu...2235 days ago
Installing Bio::SCF perl module
Most Perl modules are written in Perl, some use XS (th...OURCE=1 -DHAVE_HIDDEN -c -o gzread.o gzread.cgcc -O3 -D_LARGEFILE64_SOURC...look for a library named "libread". jitendra@jitendra-UNLOCK-I.... -I.. -I.. -I../include -I../read -I../alf -I../abi -I../ctf -I...PIC -o scf_dump scf_dump.o ../read/...2211 days ago
- To remove all line ends (\n) from a Unix text file: sed ':a;N;$!ba;s/\n/...text file: cat file_list.txt | while read line; do cp "$line" complete_...les into sets with mapped and unmapped reads: samtools view -F4 sample.b...cut -d' ' -f1 < your_file To count reads...
2210 days ago
- $ sudo apt-get install python-numpy python-scipy python-matplotlib...n-nose[sudo] password for urbe: Reading package lists... DoneBuilding dependency tree Reading state information... DoneT...elected package python-pymysql.(Reading database ... 435155 files...'w' at 0x7f85d1de31e0>, longreads...
2183 days ago
Gap filling or Contigs extensions tools !
...local re-assemblies using 454 reads. We used GAPresolution but i...of interest, and the set S of reads those contigs contain. Let C...ctor, and generate paired-end reads for this library; then try s...4. If your average sequencing depth for the region of interest ex...2158 days ago
Parallel Processing with Perl !
Here is a small tutorial on how to make best use of multiple process...sis. One best way is using perl threads and forks. Knowing how these threads and forks work is very impor...wards using perl fork than perl threads. One of the oldest way to f...max_processors);while (my $file = readd...2073 days ago
- It's been a while since I last installed BLAT and when I went to the download directory at UCSC: http://use...irectory blatSrc now move into that directory. #cd blatSrc before you begin read the READM...
2056 days ago
- Follow this: Settings file Error Your web server does not have permission to create th...this message: Welcome Installing Elgg has 6 simple steps and reading this welcome is the first one! If you haven't already...
886 days ago
