Results for "reference"
Top-level pages
...s as there are bioinformaticians (bioinformaticists?). The following references are a snapshot of the moving...squo;s individual genetic profile and compare it with a collection of reference profiles and other related in...3949 days ago
Hidden Markov Models, Viterbi Algorithm, Markov Chain Exploration with script
...on and understand it with graphical version please visit http://www.planet-source-code.com/vb/scripts/ShowCode.asp?txtCodeId=75049&lngWId=1 Reference: 1.http://www.planet-source-...3827 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...throughput sequencing data using reference-based compression. Fritz et a..., 2008 PubMedCentral [requires a reference sequence] Quake: quality-awa...mbly from RNA-Seq data without a reference genome. Grabherr et al, Natur...deep sequencing datasets with a reference sequence of a gene of interes...3781 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...opgen/softwares/quantinemo/RECOAL Simulates new haplotype data from a reference population of haplotypes. ftp...opulation viability analysis (PVA). http://www.vortex9.org/vortex.htmlReferences: Image www.evolution-of-lif...3739 days ago
Perl one-liner for bioinformatician !!!
...n|\r|' #Convert unix newlines into MAC newlines:perl -pe '/regexp/ && s/foo/bar/' #Substitute a foo with a bar in a line with a regexp. Reference/Sources: http://genomics-arr...3630 days ago
Next generation sequencing in R or bioconductor environment
...package defines general purpose containers for storing genomic intervals as well as more specialized containers for storing alignments against a reference genome. The two main function...3627 days ago
Commercial and public next-gen-seq (NGS) software
...d snps. Align/Assemble to a reference BFAST - Blat-like Fast Accura...Whole genome alignments to a reference genome. Written by Illumina a...s an input for alignment to a reference sequence or a set of referenc...tral.com/1471-2105/14/S7/S10 Reference Illumina has a software list...3521 days ago
Apps for Busy Bioinformatics Researchers !!!
...BioGene will retrieve its gene function and references into its function (GeneRIF)....ct, allele frequency in data sets, and cross-references with various genomic databas...plication provides gene and transcript cross reference information for NCBI, Ensembl...3543 days ago
Software packages for next gen sequence analysis
...product. Align/Assemble to a reference * BFAST - Blat-like Fast Accu...Whole genome alignments to a reference genome. Written by Illumina a...ired. * Novocraft - Tools for reference alignment of paired-end and s...sus Algorithm for De Novo and Reference-guided Sequence Assembly of S...3245 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ta Supported workflows include: reference-guided and de novo genome and...imputing missing genotypes uses reference panels to provide all availab...in Java, “to run halvade a reference is needed for both GATK and B...(parsed by Picard/Samtools API) Reference Genome; FASTA Output: VCF...2911 days ago
