2883 days ago
Genome Assembly Tools and Software - PART1 !!
...ST works both with and without a reference genome. The tool accepts...ine which facilitates iterative, reference guided de novo assemblies wit...lies in an unbiased manner using Reference and Paired-end Reads misFi...end reads, without the use of a reference genome for comparison. It can...2700 days ago
Perl Special Vars Quick Reference
...g'; ${^RE_TRIE_MAXBUF} Control memory allocations for RE optimizations for large alternations. Encoding ${^ENCODING} The object reference to the Encode object, used to...2658 days ago
Quick next generation sequencing (NGS) terms definition
...s: a read pair is called concordant if they can be mapped to the reference genome as “expected&rdq...air signature.split reads: a read that can only be mapped to the reference genome by breaking into two s...2536 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
...ing sequence isolated at random from a cDNA library, used for identification and mapping of coding sequences, for discovery of new genes and (by reference to sequence data banks) for d...2476 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...lfish Estimation of isoform abundances from reference sequences and RNA-seq data (k...thub.com/bioinfo-ut/GenomeTester4/ Phy-Mer Reference-independent mitochondrial hap...n) https://github.com/fanhuan/AAF kSNP v3 Reference-free SNP identification and e...2385 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
...of BBSplit is like Seal, either quantifying how many reads go to each reference, or splitting the reads into multiple output files, one per reference. BBSplit can only be run usin...2328 days ago
List of visualization tools for network biology
...dels into a database collected from public data sources http://www.cs.helsinki.fi/group/sysfys/software/rematch/ SNOW Gene mapping on a reference or human protein-protein inte...2302 days ago
List of visualization tools for genome alignments
...MagicViewer Visualization of short read alignment, identification of genetic variation and association with annotation information of a reference genome http://bioinformatics...2298 days ago
Python learning resources for bioinformatics and computational biologist !
...Official Documentation (PDF, HTML, TEXT) (2.x) Python 2.7 quick reference - New Mexico Tech (2.7)...ty - Allen B. Downey (2nd Edition) (PDF, HTML) Web2py: Complete Reference Manual, 6th Edition (pre-rele...2269 days ago