Bash script to simulate a genome !
# Reference https://github.com/chhylp123/hifiasm/issues/33...# get only 1 haplotype from the "diploid" reference bgzip -@75 -dc GCA_003401745...upper.diploid.haplotype0.fasta.gz # make reference for randomreads.sh # randomr...932 days ago
BBmap the reads with all alignments !
bbmap.sh in=../reference/reference.numbered.fa ambig=all vslow perfectmode maxsites=100000 out=fetch_Ids_for_barcode.sam832 days ago
806 days ago