Results for "reference-based"
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Scallop: reference-based transcriptome assembler for RNA-seq
Scallop is an accurate reference-based transcript assembler. Scallop features its high accuracy in assembling multi-exon transcripts as well as lowly expressed transcripts. Scallop achieves this improvement through a novel algorithm that can be proved preserving all phasing paths from reads and p...Tags: Scallop, reference-based, transcriptome, assembler, RNA-seq, Tools
2182 days ago
Rebaler: program for conducting reference-based assemblies using long reads.
Rebaler is a program for conducting reference-based assemblies using long reads. It relies mainly on minimap2 for alignment and Racon for making consensus sequences. I made Rebaler for bacterial genomes (specifically for the task of testing basecallers). It should in pri...Tags: Rebaler, program, conducting, reference-based, assemblies, long, reads, ont, pacbio
2049 days ago
