Results for "regions"
Top-level pages
...Modeler) uses interpolated Markov models (IMMs) to identify the coding regions and distinguish them from non...program and uses interpolated Markov models for evaluating the coding regions. Glimmer M A gene...3949 days ago
Hidden Markov Models, Viterbi Algorithm, Markov Chain Exploration with script
...VB6) Problem : The CG island is a stretch of DNA (usually longer than 200 bases) in which the frequency of the CG sequence is higher than other regions. It is also called the CpG is...3832 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...visualization tool is here Course materials for a short course entitled Introduction to R and Bioconductor, held in Seattle in Dec 2010 Genomic Regions Enrichment of Annotations Too...3786 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...mulates sequence-like data over large genomic regions in large diploid populations....SAMPLE An association simulator for candidate regions or genome scans http://www.ha...lex recombination patterns over large genomic regions under various demographic mod...3744 days ago
List of In-silico Binding Site Prediction Tools
...ing and measuring concave surface regions on three-dimensional structur...y surface features and functional regions of proteins. CASTp includes a...spot and anchor residues, but hot regions, defined by clusters of resid...tein interfaces (PPIs), which are regions of interaction between two pr...3751 days ago
Next generation sequencing in R or bioconductor environment
...a method that takes a ranked list of genomic regions as input and outputs short DN...) binding sites in a large number of enriched regions from high-throughput ChIP-chi...igned-read ChIP-Seq data in order to identify regions bound by transcription factor...3632 days ago
Commercial and public next-gen-seq (NGS) software
...at the National University of Singapore. Perl/R. FindPeaks - perform analysis of ChIP-Seq experiments. It uses a naive algorithm for identifying regions of high coverage, which repre...3526 days ago
Software packages for next gen sequence analysis
...t the National University of Singapore. Perl/R. * FindPeaks - perform analysis of ChIP-Seq experiments. It uses a naive algorithm for identifying regions of high coverage, which repre...3249 days ago
Binding Site Prediction in Protein !
...tein pockets. PocketPicker available as a plugin for PyMOL Binding Site Prediction ConSurf Identification of functional regions in proteins by surface-mappin...2209 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...;Annotation of genetic variants in repetitive regions” Input: Initial varian...performs localized micro-assembly of specific regions of interest; can do single, d...e) Last update- July 2014; Identifies genomic regions that are significantly &ldquo...2916 days ago
