Results for "regulatory elements"
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IMPUTE2 is a computer program for phasing observed genotypes and imputing missing g...e suggest that you work through these examples and try to understand what the elements of each command are doing. If...2759 days ago
- ...rovides a method to view the tissue specific regulatory component of a set of EWAS DM...nrichment for overlap of putative functional elements compared to matched backgroun...t on a per cell type basis, since functional elements are differentially active in...
2758 days ago
Many-Core Engine (MCE) for Perl example
MCE spawns a pool of workers and therefore does not fork a new process per each element...el workers. MCE enhances that model by adding the ability to chunk the next n elements from the input stream to the...2663 days ago
- UpSetR generates static UpSet plots. The UpSet techniqu...ntation of associated data, such as the number of elements in the aggregates and interse...takes up to 6 different lists that contain unique elements, similar to that used in the...
2590 days ago
NCBI Prokaryotic Genome Annotation Pipeline
NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and archae...irect and inverted repeats, insertion sequences, transposons and other mobile elements. NCBI has developed an autom...2558 days ago
npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
npScarf (jsa.np.npscarf) is a program that scaffolds and completes draft genomes as...onal information such as gene ordering and the detection of genes from mobile elements (plasmids and genomic islands...2551 days ago
- Circular plots are useful to represent complicated informations. They are used in...axis and numerous categories, and when you want to show relationships between elements. The circos gallery ...
2524 days ago
Mulan: MUltiple sequence Local AligNment and conservation visualization tool
Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "ful...from the UCSC Genome Browser, gene annotation, annotation of repetitive elements, and progress report were pre...2493 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
Monitoring the progress of DNA molecules through a membrane pore has been postulated as...res of the genome and correctly assembles gene cassettes, rRNAs, transposable elements, and other genomic features t...2361 days ago
phyloXML: XML for evolutionary biology and comparative genomics
phyloXML (example) is an XML lan...d associated data. PhyloXML provides elements for commonly used features, s...ion events. Using these standardized elements allows interoperability betwe...nd the provision of <property> elements by phyloXML, extensibility as...2361 days ago
