dnaPipeTE: de-novo assembly & annotation Pipeline for Transposable Elements
dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to f..., annotate and quantify Transposable Elements in small samples of NGS datas...sp;http://lbbe.univ-lyon1.fr/-Equipe-Elements-transposables-.html?lang=en...2357 days ago
ACANA: An accurate and consistent alignment tool for DNA sequences
...on score. As an accurate alignment tool, ACANA is particularly useful in comparative sequence analysis for identifying conserved functional regulatory elements.2354 days ago
TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions
TRRUST contains 8,444 and 6,552 TF-target regulatory relationships of 800 human TFs and 828 mouse TF...iptional regulations. To efficiently search for regulatory relationships from over 20 mi...ivation or repression). Currently 8,972 (59.8%) regulato...2338 days ago
2310 days ago
HTTDB - Horizontally transferred transposable elements database
Transposons or Transposable elements (TEs) are "mobile genes" capable of mobilization from one genomic location to another through non-homologous recombination. As this movement is me...2306 days ago
PhyloGrapher - Graph Visualization Tool
PhyloGrapher is a program designed to visualize and stu...within families of homologous genes or proteins (elements). PhyloGrapher is a...l that generates custom graphs for a given set of elements. In general, it is possible t...2262 days ago
“One code to find them all”: a perl tool to conveniently parse RepeatMasker output files
One code to find them all is a set of perl scripts to extract useful information from RepeatMasker about transposable elements, retrieve their sequences and...2174 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
Provides interactive, configurable and elegant graphics visu...living organism allowing users to map chromosome elements (like genes, SNPs etc.) on th..."chromosome heatmap" that, in addition to mapping elements, can visualize the data assoc...1862 days ago
Mulan: Multiple-sequence local alignment and visualization for studying function and evolution
Mulan: Multiple-sequence local alignment and visualization for studying function and evo...omparing multiple draft and finished-quality sequences to identify functional elements conserved over evolutionary t...2093 days ago
S-plot2: creates an interactive, two-dimensional heatmap of sequences
S-plot2 creates an interactive, two-dimensional heatmap capturing the similarities and d...ckly evolving coding regions, novel coding regions, and laterally transferred elements. http://www.putonti-lab.com/...2058 days ago