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• • Jit@jit.aber

  

  Trimmomatic: A flexible read trimming tool for Illumina NGS data

  ...LUMINACLIP:TruSeq3-PE.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 This will perform the following: Remove adapters (ILLUMINACLIP:TruSeq3-PE.fa:2:30:10) Remove leading low quality or N base...

  2936 days ago

• • Jit@jit.aber

  

  BioDBnet

  ...more output types and add your identifiers in the ID list box. Set the remove duplicate values to 'No' if you do not want duplicates to be removed. Clicking on submit then ret...

  2888 days ago

• • Archana Malhotra@archana

  

  vcfR

  ...ent is discussed in the vignette ‘vcf data.’ These files are typically intended to be post-processed (i.e., filtered) as an attempt to remove false positives or otherwise...

  2810 days ago

• • Rahul Nayak@rahul

  

  BASE: a practical de novo assembler for large genomes using long NGS reads

  ...gh probability to appear uniquely in the genome. Such seeds form the basis for BASE to build extension trees and then to use reverse validation to remove the branches based on read co...

  2019 days ago

• • Jit@jit.aber

  

  Chromonomer: a tool set for repairing and enhancing assembled genomes through integration of genetic maps and conserved synteny

  Chromonomer is a program designed to integrate a genome assembly with a genetic map. Chromonomer tries very hard to identify and remove markers that are out of order in the genetic ma...

  1533 days ago

• • Neelam Jha@neelam

  

  FiNGS: Filters for Next Generation Sequencing

  Key features Filters SNVs from any variant caller to remove false positives Calculates metrics based on BAM files and provides filtering not possible with other tools Fully user-...

  1157 days ago