Results for "repetitive"
Blogs
BBTools for bioinformatician !
...vslow perfectmode maxsites=1000 It should be very fast in that mode (despite the vslow flag). Vslow mainly removes masking of low-complexity repetitive kmers, which is not usually a...2264 days ago
Bookmarks
Junk part of the human genome unlocked
...NA is not stagnant as researchers originally had believed " Simple Quantitative PCR Approach to Reveal Naturally Occurring and Mutation-Induced Repetitive Sequence Variation on the Dro...3489 days ago
Resolving the complexity of the human genome using single-molecule sequencing
...close-gaps-chart-complexity-human-reference suggest a greater complexity of the human genome in the form of variation of longer and more complex repetitive DNA that can now be largely r...3214 days ago
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Pages
Genome Assembly Tools and Software - PART2 !!
...e contigs. ATLAS GapFill 2.2 – Deals with the Repetitive Gap Assembly problemATLAS GapFill deals with the repetitive gap assembly problem by using...ny genomes, including many that are large and highly repetitive. Reconciliator 2.0 – T...2679 days ago
Top-level pages
- ...e that calls itself repeatedly until a certain condition matches. It is a method common to functional programming. Iterative algorithms use repetitive constructs like loops.Some pr...
3940 days ago
Commercial and public next-gen-seq (NGS) software
...ahaSNP is a polymorphism detection tool. It detects homozygous SNPs and indels by aligning shotgun reads to the finished genome sequence. Highly repetitive elements are filtered out by...3512 days ago
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ResearchLabs posts
- ...sms and rate of chromosome rearrangements, sequence structure of chromosome breakpoints, modes of centromere shift and elimination, evolution of repetitive sequences, and reconstructing...
1208 days ago
Bio-Scripts
- ...are are roughly 150k per base-pair of sequence. Complex sequences use more disk space than repetitive ones. defau...
2687 days ago
Tags
- Tallymer is based on enhanced suffix arrays. This gives a much larger flexibility concerning the choice of the k-mer size. Tallymer can process large data sizes of several billion bases. We used it in a variety of applications to study the genomes of maize and other plant species. In particu...
Tags: Tallymer, method, compute, K-mer, frequencies, application, annotate, large, repetitive, plant, genomes
2264 days ago
Comments
- ...d Paradigm in it's Programming.Object-oriented programming allows you to create data structures that can be re-used, which reduces the amount of repetitive work that you'll need to do....
2513 days ago
