3810 days ago
A simple tutorial for a complex ComplexHeatmap
...ing Language (R Core Team (2020)) package that is currently listed in the Bioconductor package repository. install and load required packages require(RColorBrewer) require(Comp...1143 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
...following the conserved order and orientation of features, such as protein coding genes, non-coding genes, or neutral sequences. Satsuma does not require any pre-processing, such as r...2928 days ago
1985 days ago
Web Apollo: a web-based genomic annotation editing platform
...es following from current advances in sequencing technology is that there are more and more researchers sequencing new genomes. These researchers require tools to describe the functio...2487 days ago
2352 days ago
Computational Genomics: Applied Comparative Genomics
...gnments, a midterm exam, class presentations, and a significant class project. There are no formal course prerequisites, although the course will require familiarity with UNIX scripti...2363 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...a filtering engine capable of selecting relevant hits with user-defined criteria (E-Value, identity, coverage, alignment length, etc.), Does not require any additional hardware, sinc...2361 days ago
dnaPipeTE: de-novo assembly & annotation Pipeline for Transposable Elements
...sable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not require genome assembly and works on...2359 days ago
HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
...lized contact maps. Since version 2.7.0, HiC-Pro supports the main Hi-C protocols, including digestion protocols as well as protocols that do not require restriction enzyme such as DN...2356 days ago