3593 days ago
3593 days ago
3593 days ago
Comment on "List of popular bioinformatics software/tools"
TopHat http://tophat.cbcb.umd.edu/manual.shtml is a program that aligns RNA-Seq reads to a genome in order to identify exon-exon splice junctions. It is built on the ultrafast short read mapping program Bowtie.3653 days ago
Comment on "R and Bioconductor Tutorial"
...in R [2] BSGenomes – Reading in complete genomes and BioC annotation data [3] DEGSeq – Identify differentially expressed genes from RNA-Seq data. [4] IRanges – in...3675 days ago
Comment on "Encode sequencing data freely available to download and use for academic means"
You can access the collected papers by exploring the thematic ENCODE threads with topics such as DNA methylation, RNA or machine learning. http://www.nature.com/encode/#/threads3710 days ago