Results for "run"
Bio-Scripts
...sentials: # Debian/Ubuntu system admins should run: sudo apt-get install -y bui...libxml2-dev # RHEL/CentOS system admins should run: sudo yum groupinstall -y 'D...::Log4perl FindBin::Real Getopt::Long Catalyst::Runtime Catalyst::Devel List::Uti...2159 days ago
Install BLAST in Ubuntu/Linux and Window !
.... #If that FTP links does not work, try HTTP instead http://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.7.1/ncbi-blast-2.7.1+-win64.exe #Run this installer using the de...1162 days ago
- #!/usr/local/bin/perl -w # Can be easily modified to run any command on every sequence in a folder # Directory of sequences $myDir = "/home/anjana/seqs"; # Output directory...
2931 days ago
Install ATOM editor on Elemantory OS / Ubuntu
...ll, link, linked, links, list, ln, lns, login, ls, open, outdated, prune, publish, rebuild, rebu...st, uninstall, unlink, unpublish, unstar, update, upgrade, view. Run `apm help ` to see the more d...1191 days ago
- ...# DB_File and GD.pm, available from CPAN. # For usage information, run this program with the flag #...le appears If for some reason this program is disrupted during a run, restart with the same parame...
2708 days ago
Transpose the file coordinates and plot dendrogram in R
#Save this as tr.awk { for (i=1; i2632 days ago
Genetic Algorithms demonstration with word DNA in Perl
...minimum fitness for survival my $generation_count = 100000; # run for this many generations my...ion to the individuals } while ($generation++ < $generation_count); # run until we are out of generatio...2387 days ago
Plot the clock using Lastz -gerenal outfile
...h @allFreq, $score; } my $allKeys=join ',', @allKeys; my $allFreq=join ',', @allFreq; my $hLen=scalar (@allKeys); my $ll="$hLen".'L'; $R->run(qq` d stopR() ;2314 days ago
Perl script to convert fastq to fasta file
...die $usage; my $factory = Bio::Factory::EMBOSS->new; my $seqret = $factory->program('seqret'); # $seqret is a Bio::Tools::Run::EMBOSSApplication object $seqret->run({-sequence => $infile,...2266 days ago
Estimate Genome Size with Jellyfish and R
...mation/sample_read_1.fastq /common/Tutorial/Genome_estimation/sample_read_2.fastq #-t -treads=unit32 Number of treads to be used in the run. eg: 1,2,3,..etc. #-C -bo...2261 days ago
